Protein Info for EX28DRAFT_1642 in Enterobacter asburiae PDN3

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 72 to 88 (17 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 386 to 404 (19 residues), see Phobius details amino acids 412 to 432 (21 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details amino acids 462 to 482 (21 residues), see Phobius details amino acids 495 to 513 (19 residues), see Phobius details amino acids 569 to 586 (18 residues), see Phobius details PF04632: FUSC" amino acids 20 to 663 (644 residues), 531.6 bits, see alignment E=3.5e-163 PF13515: FUSC_2" amino acids 33 to 163 (131 residues), 56.3 bits, see alignment E=3.9e-19

Best Hits

Swiss-Prot: 81% identical to YDHK_SALTI: Uncharacterized transporter YdhK (ydhK) from Salmonella typhi

KEGG orthology group: None (inferred from 96% identity to enc:ECL_02326)

Predicted SEED Role

"FIG01045166: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>EX28DRAFT_1642 Predicted membrane protein (Enterobacter asburiae PDN3)
MKLQGLSWQNTPWMKATRPQWRYALRNGIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPT
VGGVISKSLGRIAGSLLGATAALIIAGHTLNDPWLFLLSMAAWLGCCTWACAHFTNNVAY
AFQLAGYTAAIIAFPVVNVLDTTELWDIAQARVCEVIVGILSGGFMMMILPSTSDGTALI
TALKTMHTRLLEHASLLWQPDTSDDIRLAHEKVIGQILTMNLLRIQAFWSHYRFRRQNTL
LNYLLHQQLRMTSAISSLRRMLLNWPTPPENTRAVIETLLAALARPDADIYTVARIIAPL
APVDEYDYRHRAFWQRLNYFCRLYLRSSRWITAVENATPLTEFNVPGSPALARHTDYLEA
LWSGFRTFCALMLVGAWSITTQWESGTAALTLAAISCVLYSVAASPFNSLTLLLRTLVLL
SLFSFVVKFGLMVQISDLWQFLLFLFPLLTTMQLLKLQMPKLAGLWGQLIVFMGSFISVT
NPPVYDYADFLNDNLAKILGVGLAWLAFAVLRPGSDARKSRRHIRELRSGFVDQLSRKPH
LGENEYESLVYHHVSQLNNSQDALSRRWLLRWGVVLLNCSHVVWQLRAWETRSDPLSQVR
DVCISLLRDVMSERGVQQRPLETTLNELQRICDTLAQHHLPAARDLASIIWRLHCSLSQL
EQAPPPGTIGDQITPHA