Protein Info for EX28DRAFT_1580 in Enterobacter asburiae PDN3

Annotation: Phage-related lysozyme (muraminidase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 64% identical to ENLYS_BPPS1: SAR-endolysin (19) from Bacteriophage PS119

KEGG orthology group: None (inferred from 91% identity to enc:ECL_03208)

MetaCyc: 65% identical to DLP12 prophage; lysozyme (Escherichia coli K-12 substr. MG1655)
Lysozyme. [EC: 3.2.1.17]

Predicted SEED Role

"Lysozyme (EC 3.2.1.17)" (EC 3.2.1.17)

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.17

Use Curated BLAST to search for 3.2.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>EX28DRAFT_1580 Phage-related lysozyme (muraminidase) (Enterobacter asburiae PDN3)
MNPTLRNKLVGAVVGGASAITIAAVMLGNADGLEGRRYYAYQDVVGVWTVCDGHTGADIR
RGHRYTDKECDALLQSDLRKVAAAIDPLIKVHIPETTRAALYSFTYNVGAGAFSRSTLLK
KINFGDVPGACKELQRWTYAGGKQWKGLITRREIEREVCEWGQK