Protein Info for EX28DRAFT_1563 in Enterobacter asburiae PDN3

Annotation: phage tail tape measure protein, lambda family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 PF06791: TMP_2" amino acids 197 to 398 (202 residues), 184 bits, see alignment E=3.1e-58 TIGR01541: phage tail tape measure protein, lambda family" amino acids 586 to 923 (338 residues), 218.1 bits, see alignment E=8.9e-69 PF09718: Tape_meas_lam_C" amino acids 745 to 817 (73 residues), 75.1 bits, see alignment 3.6e-25

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (970 amino acids)

>EX28DRAFT_1563 phage tail tape measure protein, lambda family (Enterobacter asburiae PDN3)
MSYDIATISLRVNTNELERGNQALDRFQETASAAAGKADDLNSTFRTGIDNQKKNSESLK
QQRQELQNLLNKISPVNKALDELDTIQESLAKFRGKGLVGDEDFTRYNSVLETTRAKLAQ
VMESETAEGRARIEQAQAAQRAAAAGKTFIDSLEEQVTAIGKTRAELLELKAAQLGVSDR
AAPMIARLKEQEEAWRSGAISAGQYRNAMRYLPMQMTDIVTSLASGMPVYMVAIQQGGQL
RDSFGGVGNALKAMLSMVTPARVAIGGLAGAVLIAAKAGADYFTAYDEINKAIIRTGNIA
GTSALQVMASSQSIAASTGATVETVQSLMTELISMGSLTQQQLEKAAGSTALAVQTGIVS
AQDITKAYQDIEKDPVKALQSLNEQYNFLTVSQLKHIDELVKQKDRTAAVTQAMDLFGDT
MAQRGEQAYDSLTPFGRLWLDIKDWASEAMHSIGQWVAELASNTLKEFNAIYYSVAIVFQ
KLNQIISSSIAAAINLIPDWAKTDTLQGWQDYNEQMAGAYGDSVSQLKKDWDAADISAGK
YLDTTRKISTATTQKDREGVASFGKKTQTGKQGTLSAGDRSTNAAQAELLALQAQLRALQ
QHKGLNDTISQQRKDLWTTEAKFQVLEEASRSRSLTKQEQSLLASKDQVLQLARQKALLG
DQISAQELLNKRMDTSQKYVTQMAEKQAALLGGAGMSDRQAQRELAKSQLTAGWKNTGGS
LDEEGYQKQLKAANDYYDAEDQLRGDWLTGVKKGWAEFEDSATNVYSQVQTITSNAFTGM
ASTLTDFFTTGKSNFSDFLSTFLKGIAQMLTQLALVNGMKSAFGGTGIGAFFGFSGGGLV
PRFDSGGYTGDGGKYQPKGVVHGGEFVFTKEATSALGVGNLYALMRGAQGYANGGYVGTA
PMYGLQSNAAGGVTVQTSVVVQNQNTHQQTSGNNDAISRAYKQTIDQSVRAGIAKELQPG
RLIWNAMKSR