Protein Info for EX28DRAFT_1520 in Enterobacter asburiae PDN3

Annotation: Cation/multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 367 to 389 (23 residues), see Phobius details amino acids 396 to 418 (23 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 469 to 492 (24 residues), see Phobius details amino acids 527 to 546 (20 residues), see Phobius details amino acids 859 to 878 (20 residues), see Phobius details amino acids 886 to 904 (19 residues), see Phobius details amino acids 910 to 933 (24 residues), see Phobius details amino acids 961 to 980 (20 residues), see Phobius details amino acids 986 to 1010 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 13 to 1009 (997 residues), 513.7 bits, see alignment E=4.8e-158

Best Hits

KEGG orthology group: None (inferred from 90% identity to enc:ECL_02244)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1025 amino acids)

>EX28DRAFT_1520 Cation/multidrug efflux pump (Enterobacter asburiae PDN3)
MNTGPEAKFNLSAWALKNQQMVSFFMLLVIAMGVFCYEKLPRNEDPAFTIKTAVVSAQWP
GASVADTTRLLTDTLEKKLQETPWLDYLESETRAGRTVIHVNLRDDTPPQSVPDIWYQVR
KKMQDIAPSLPDGVQGPAVDDEFDDTFGTIYAFIPEGFTLREVRDRVETIRRELMSLPDM
GKTTLLGEQQEQWVLAFSPARLAGMGLDIQAVADALRAQNAVVPAGTMRTEKENMAIKVS
GALTTEESLRAVTLHVNNRYIPLTDIATITREIAEPPAPAYRVNGRPAIGLAVSMAPTGN
MLRFGAALNARMAALSAGLPHGIEMVKVADQSAVVSDAASGFIRVLIEAVIIVLAVSFVS
LGLRAGLVVATAIPLVLAMTFAGMMLAGIGLQRISLGALIIALGLLVDDAMIAVETMVSR
LEAGDSRRLAATHAFKTTAFPMLTGTLVMIAGFIPVGFAASSAGEYCFSLFAVVLIALLC
SWAVAILFSPLTGTWLLPEKVRPHAAGPGRIARGYGRLLRLALRHRLATVLIALSALGLS
AYGTTFMQGEFFPASDRPELLVSLTLPANASQPETLREVEKLEKALASNGNIDRYSTYVG
SGAIRFYLPMDVLLENENIAQMVVVAKDLEARDRLHAQLNRILATQFSDIITRVSPLELG
PPVGWPIKYRVSGPDYLQVRAFANRLTDAIGQSPYSRDVNQTAGEPERVITLEVNQTAAR
AAGISSESLARTLNTVWSGSVVTSIRDNDRLVDVVLRATDDARHSTATLSSLTIQGNDGK
KIPLSAVATPVWGVDDPVIWRRQRVPFITVQTDLAPEMKAEAVSAALRPAVDRLRASLPA
GYSIEEGGAVAESDKGNSSVFTVLPVTLVLMLLLLMLQLRRYSRMLLALLMAPFGLPGIV
LAMLPGGTPMGFVALLGVIALAGMIVRNAVILISEVDSNLAQGMANDAAIMAAAEHRARP
ICLTACAAILGMIPISHQVFWGPMAYAIIGGLLVATLVTLTVLPASFSLLLQWGAQRNAA
EDGLR