Protein Info for EX28DRAFT_1495 in Enterobacter asburiae PDN3

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 38 to 60 (23 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 327 to 353 (27 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details amino acids 393 to 412 (20 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 262 (221 residues), 108.2 bits, see alignment E=4.5e-35 amino acids 244 to 410 (167 residues), 38.7 bits, see alignment E=6e-14 PF00083: Sugar_tr" amino acids 76 to 218 (143 residues), 42 bits, see alignment E=6.2e-15

Best Hits

Swiss-Prot: 89% identical to YNFM_ECOLI: Inner membrane transport protein YnfM (ynfM) from Escherichia coli (strain K12)

KEGG orthology group: K08224, MFS transporter, YNFM family, putative membrane transport protein (inferred from 95% identity to enc:ECL_02222)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>EX28DRAFT_1495 Arabinose efflux permease (Enterobacter asburiae PDN3)
MSRTTTIDIDPARDINDLPAAPQPVQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPIL
PVLSHEFGVSPASSSISLSISTGMLAIGLLFTGPLSDAIGRKQVMVTALMLASVCTLLST
MMTSWHGILVMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLL
SGVFTDFFSWRIALAVIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRDKG
LPRLFLMGFLLMGAFVTLFNYIGYRLMLSPWHLNQAVVGLLSVAYLTGTWSSPKAGAMTA
RYGRGPVLLVFTGVMLLGLLLTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRARRAK
GQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGGFIALMLCAALLVGASLHKRLR