Protein Info for EX28DRAFT_1486 in Enterobacter asburiae PDN3

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 35 to 57 (23 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details PF06912: DUF1275" amino acids 35 to 247 (213 residues), 108.7 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: None (inferred from 88% identity to enc:ECL_02212)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>EX28DRAFT_1486 Predicted membrane protein (Enterobacter asburiae PDN3)
MHRFASLTIQAKLNLEVFLLIRLKKERTHKEDRRLALWLATSAGLLNAIALGAFGFFPSH
MTGNTSQLSSEVSSNDLSDIIFFGSIILSFVAGAILARMIVIWGIIHNVRLVFCQILFVE
GILLTGVSFYEMYFHALTSNRVIILFLCGLMGIHNSTSTQLSGGRVRSTHITGTLTDAGI
SLASVMVAMLRRDYSKDTAAQKSQLKTHLTTLFSFITGGIAGLLLFRWIGFNAMLALGLM
LAVVAIVSIISVSTRVRRVRASL