Protein Info for EX28DRAFT_1314 in Enterobacter asburiae PDN3

Annotation: SOS-response transcriptional repressors (RecA-mediated autopeptidases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 PF01381: HTH_3" amino acids 29 to 76 (48 residues), 28.1 bits, see alignment 1.7e-10 PF00717: Peptidase_S24" amino acids 110 to 231 (122 residues), 87.7 bits, see alignment E=4.8e-29

Best Hits

KEGG orthology group: None (inferred from 76% identity to kpe:KPK_4176)

Predicted SEED Role

"Phage repressor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>EX28DRAFT_1314 SOS-response transcriptional repressors (RecA-mediated autopeptidases) (Enterobacter asburiae PDN3)
MEKKKEITPNQAEDAKRLKAIYEAKKKVLGVTQQSIADELDITQGAVGHYLNGRNPLNVP
VASVFARLLKVSVEEFSPTLAKELSEMGLASFNEPSVPYVVGYTQGKRYPVISSVQAGSW
CEALEPYSIKDVDQWLESDAHIQGDAFWLRVEGDSMTAPAGLSIPEGTFVLFDTGREPIN
GSLVIAKLSDSNEATFKKLIIDGGQKYLKGLNPQWPLVPINGNCRIIGVAIETKLKLV