Protein Info for EX28DRAFT_1247 in Enterobacter asburiae PDN3

Annotation: Glycosidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 PF00128: Alpha-amylase" amino acids 12 to 449 (438 residues), 253 bits, see alignment E=1.1e-78 PF22157: SupH-like_C" amino acids 478 to 533 (56 residues), 29.2 bits, see alignment 1.7e-10

Best Hits

KEGG orthology group: K05343, maltose alpha-D-glucosyltransferase [EC: 5.4.99.16] (inferred from 90% identity to enc:ECL_02049)

Predicted SEED Role

"Trehalose synthase (EC 5.4.99.16)" in subsystem Trehalose Biosynthesis (EC 5.4.99.16)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.4.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (541 amino acids)

>EX28DRAFT_1247 Glycosidases (Enterobacter asburiae PDN3)
MTDWHTRAIIYQIDTALFYDLNGDGCGDIAGIAAKLRYIRRMGATVIWITPFYLTPFLDE
GYDVSDHLQVDPRFGKLADIIAFIEQARELGMQVIIELLIQHTSDAHPWFQQARRSPASP
YRDYYLWSDSDEDDTPPMFPGVEKSIWTWDDEAGQYYRHMFYRHEPDLNLTSPAVLKEIK
NIILFWLKLGVSGFRLDAASHLTTQAGNGDEKKGLWILEHMRRLIEERNPDAILLGEVDV
DVETYKDYFGKNDRLNLVLNFWLNKYFYVSLARKSARPLRNAVKKMIVPPDACCFANWLR
NHDELDLEGISQKDKQFVLDTFAPDEEMNVYQRGIRRRLAPMLNGDRKRLAFCHAVLFSL
PGVPVMRYGDEIGMGDDLELEERYAVRTPMQWAGSQGGGFSAADPEKFIAPIIDHGPHRY
QKVNVADSLLHHNSLLHRIIDIANTRSEFPEIAVAPFRLITIDDDAVLGLYYETDERSIL
TFVNFSDQPVQFTTKGIRNATWTACLEDKRYDDALICGKTVQLTLGGYGYRWFWTHRSAL
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