Protein Info for EX28DRAFT_1100 in Enterobacter asburiae PDN3

Annotation: transcriptional regulator, BadM/Rrf2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 TIGR00738: Rrf2 family protein" amino acids 5 to 143 (139 residues), 89.9 bits, see alignment E=6.4e-30 PF02082: Rrf2" amino acids 5 to 144 (140 residues), 109.9 bits, see alignment E=5.3e-36

Best Hits

KEGG orthology group: None (inferred from 81% identity to cko:CKO_04949)

Predicted SEED Role

"Predicted transcriptional regulator of NADH dehydrogenase, Rrf2 family" in subsystem Rrf2 family transcriptional regulators

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>EX28DRAFT_1100 transcriptional regulator, BadM/Rrf2 family (Enterobacter asburiae PDN3)
MAFYSSGVEYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVIST
EGKGGGFQLARPAELITVLDVTHAIDGEKNMFECREIRQRLAVFDETPPAWVCDGPCGVR
SVMDSAQQRMEEELARHTILDLARKMYRKAPDTFQIEVQEWISDRRSS