Protein Info for EX28DRAFT_1076 in Enterobacter asburiae PDN3

Annotation: ABC-type branched-chain amino acid transport systems, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00005: ABC_tran" amino acids 19 to 180 (162 residues), 103.8 bits, see alignment E=1.3e-33 PF12399: BCA_ABC_TP_C" amino acids 228 to 253 (26 residues), 39.2 bits, see alignment (E = 4.3e-14)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 92% identity to cko:CKO_02935)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>EX28DRAFT_1076 ABC-type branched-chain amino acid transport systems, ATPase component (Enterobacter asburiae PDN3)
MSLLTVRNMSKRFGGLTAVDDVSMAVNKGEIYGLIGPNGAGKTTCFNLITGLYPADSGEF
SIADKPYFPKHIEKVTAAGIARTFQNVRLFNDMSVLENVMVGRHVRTRNGLWAALSRHKR
AREEEKQTRELSWHWLEYTGIAKFAHYRACDLAYGHQRRLEIARALATDPLLLALDEPAA
GMNAAEKVALGELLIRLRDDGKTLLMIEHDVKLVMGICDRLTVLDYGKTLASGTPESVRR
DPAVIAAWLGGNAHV