Protein Info for EX28DRAFT_1062 in Enterobacter asburiae PDN3

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 179 to 200 (22 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF03547: Mem_trans" amino acids 6 to 307 (302 residues), 125.1 bits, see alignment E=1.3e-40

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 84% identity to esc:Entcl_1686)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>EX28DRAFT_1062 Predicted permeases (Enterobacter asburiae PDN3)
MPSLLLQSLFPLVLIMLLGWLSGKLGYSRREDANVMATVVIRFALPFHLFIGALHTEPNK
IKNLTFMAVLVVGLMGSYLLTLFISRYVFRHDIKTSAIQSLVCAFPDMAYFGAPVLAVLI
GPEGFIGVLIGNIITSVIMIPLTIVLIRMGDKNGHDGLEALHPGAMIVQNLIKAARNPIV
WIPVSGVLLSLAGVQIPSILSMPIEMVGKVSGGLSLFALGLLFYGERPKLNVQTFTNISI
KNLIQPAMMAAAGLAFGLSHTLLQQVVIIGATPSAIAAGMFALRSDTYIDTASSSILIGT
AVGVVTEGIMIYFIS