Protein Info for EX28DRAFT_1056 in Enterobacter asburiae PDN3
Annotation: ABC-type polar amino acid transport system, ATPase component
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 53% identical to GLUA_COREF: Glutamate transport ATP-binding protein GluA (gluA) from Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
KEGG orthology group: None (inferred from 98% identity to enc:ECL_01877)Predicted SEED Role
"Amino acid ABC transporter, ATP-binding protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (257 amino acids)
>EX28DRAFT_1056 ABC-type polar amino acid transport system, ATPase component (Enterobacter asburiae PDN3) MQASPEGHISITGVSKFFGRHKALDNVSLEIPPGSVTVILGPSGSGKSTLLRTINHLERV DEGFIQIDGDYIGYRRQGDKLYELKEKEILKQRVNVGYVFQNFNLFPHLTVLENLIEAPI AHKKLSKKEAVERAYSLLDVVGLRDKADAWSRHLSGGQQQRIAIARALALRPRVMLFDEP TSALDPELVGEVLDVIKKLARSGTTLVVVTHEIGFAREVADQVVFMVDGKIVEQGSSDEV LNRPSHARTRQFLSKVL