Protein Info for EX28DRAFT_1017 in Enterobacter asburiae PDN3
Annotation: Outer membrane protein (porin)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 82% identical to OMPN_ECOLI: Outer membrane porin N (ompN) from Escherichia coli (strain K12)
KEGG orthology group: K14062, outer membrane protein N (inferred from 94% identity to enc:ECL_01838)MetaCyc: 82% identical to outer membrane porin N (Escherichia coli K-12 substr. MG1655)
RXN0-2481
Predicted SEED Role
"Outer membrane protein N precursor"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (369 amino acids)
>EX28DRAFT_1017 Outer membrane protein (porin) (Enterobacter asburiae PDN3) MQRKVLALMIPALLMAGSAHAAEIYNKDGNKLDLYGKVDGLHYFSDNKGADGDQTYMRLG FKGETQINNTMTGYAQWEYNIQANNTEGSDNQSWTRLAFAGVKVGDYGSFDYGRNYGVLY DVEGWTDMLPEFGGDSYTKADNFMTGRANGVATYRNTDFYGLVQGLNFALQYQGKNEDAS NNQEGTNNGRDTRHENGDGFGISTTYDFGMGITAGAAYTSSDRTNEQVMNTTAGGDKADA WTAGLKYDANNIYLAAMYSETRNMTPYGDNTDAVANKTQNFEVTAQYQFDFGLRPSLSYL QSKGKDLGNGQGDQDLVKYADVGVTYYFNKNMSTYVDYKINLLDEDDNFYKDNGISTDDV VALGLVYQF