Protein Info for EX28DRAFT_0993 in Enterobacter asburiae PDN3

Annotation: TIGR01620 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 70 to 87 (18 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 54 to 341 (288 residues), 482.8 bits, see alignment E=1.8e-149 PF05128: DUF697" amino acids 183 to 341 (159 residues), 190.1 bits, see alignment E=1.2e-60

Best Hits

Swiss-Prot: 89% identical to Y2153_ENT38: UPF0283 membrane protein Ent638_2153 (Ent638_2153) from Enterobacter sp. (strain 638)

KEGG orthology group: K08990, putative membrane protein (inferred from 95% identity to enc:ECL_01793)

Predicted SEED Role

"Membrane protein YcjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>EX28DRAFT_0993 TIGR01620 family protein (Enterobacter asburiae PDN3)
MTEPLKPRIDFTGTLEQDPQEAFKTAQTFSGTQADNFAPALTEEPGVEEGPAEAVVEAAL
RPKRSLWRRMVTAGLALFGVSVVGQGVQWTMNAWQTQDWVALGGCAAGALIVGAGIGSVT
TEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLASQAGIDQSHPALQRWYAAIHE
TQNDREVVTLYSHMVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLIN
RIANLYGIELGYYSRLRLFKLVLLNIAFAGASELVREVGMDWMSQDLAARLSARAAQGIG
AGLLTARLGIKAMEVCRPLPWIDGDKPRLGDFRRELIGQLKETLNKKPAP