Protein Info for EX28DRAFT_0859 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF02810: SEC-C" amino acids 1 to 19 (19 residues), 28.4 bits, see alignment (E = 1.2e-10) amino acids 134 to 152 (19 residues), 41.8 bits, see alignment (E = 7.6e-15) PF17775: UPF0225" amino acids 30 to 127 (98 residues), 109.5 bits, see alignment E=1.3e-35

Best Hits

Swiss-Prot: 83% identical to Y2310_ENT38: UPF0225 protein Ent638_2310 (Ent638_2310) from Enterobacter sp. (strain 638)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 83% identity to ent:Ent638_2310)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (152 amino acids)

>EX28DRAFT_0859 Uncharacterized protein conserved in bacteria (Enterobacter asburiae PDN3)
MSQLCPCGSALEYSLCCQRYLSGDQVAPDPSHLMRSRYTAFVIKDADYLIKTWHPSCHAD
EFRQDIEAGFANTQWLGLTVYESSTGSHVDEGYVSFVARFSENNKPGAIIERSRFLKESG
QWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ