Protein Info for EX28DRAFT_0839 in Enterobacter asburiae PDN3

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 272 to 294 (23 residues), see Phobius details PF02743: dCache_1" amino acids 38 to 253 (216 residues), 60.3 bits, see alignment E=3e-20 PF00672: HAMP" amino acids 288 to 340 (53 residues), 50.2 bits, see alignment 4e-17 PF00015: MCPsignal" amino acids 405 to 560 (156 residues), 175.3 bits, see alignment E=1.6e-55

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 94% identity to enc:ECL_01608)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>EX28DRAFT_0839 Methyl-accepting chemotaxis protein (Enterobacter asburiae PDN3)
MFRSIRARIIVATAGCLVVALLLNTVINFQVTRQDNQQSQRDILTSTSASHNMAIADWVK
SKMTVIASAQTVALNDDPVPVFKQLAQAGGFTNVYVGYASKTAKFSEPAGVPADYDPTIR
PWYQQVVSTDGPVVTAPYVDAGTGKLVVTFAVPVKENGTLKAVVAGDVAMDSVVANVRGI
HPTPASSGLLLNSDGSVIAANDPALTLKPFAETIKGIDFAALKSGNPVDGTLNDAEKTFV
ATAVPGTNWLLVVALDSGDATSGMRSLLKASGISLVILALLSAAIVHFLIARLLKRLSDI
RDAMHSIANGTNDLSQRLPDNGEDEVAQIAQAFNAFSDKLSVVMVQLRDASESVKNAAQE
IAAGNQDLSGRTEQAASSLRETASAVEQITASVTQSNESAAEANDQASKASAAAARGGEV
VSQAISTMQSIEVASAKIGDITSVIDGIAFQTNILALNASVEAARAGEQGRGFAVVAGEV
RNLASRSAQAAKEIKSLIDSTTDSVATGSRYVHLAGESMDEIRSSIGSVSGIMREISIAT
SEQMKGIHEINHAVTHLDRMVQQNAELVVESAAAAGALQSQAGDLAETAGHFRI