Protein Info for EX28DRAFT_0807 in Enterobacter asburiae PDN3

Annotation: type VI secretion ATPase, ClpV1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 14 to 859 (846 residues), 1282.1 bits, see alignment E=0 PF02861: Clp_N" amino acids 28 to 75 (48 residues), 20.2 bits, see alignment 3.3e-07 PF00004: AAA" amino acids 223 to 354 (132 residues), 40.5 bits, see alignment E=2.2e-13 amino acids 608 to 692 (85 residues), 31.3 bits, see alignment E=1.5e-10 PF17871: AAA_lid_9" amino acids 363 to 457 (95 residues), 95 bits, see alignment E=1.4e-30 PF07724: AAA_2" amino acids 602 to 767 (166 residues), 186.1 bits, see alignment E=3.2e-58 PF07728: AAA_5" amino acids 607 to 727 (121 residues), 35.2 bits, see alignment E=7.2e-12 PF10431: ClpB_D2-small" amino acids 775 to 847 (73 residues), 52.3 bits, see alignment E=2.8e-17

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 98% identity to enc:ECL_01551)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (871 amino acids)

>EX28DRAFT_0807 type VI secretion ATPase, ClpV1 family (Enterobacter asburiae PDN3)
MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVIHHF
ALDEQQLTRDIVAALDVLPRGASSVSDLSEHIDSAVERAWVFGSLKFGVSRIRGGHLLIG
MLKTWNLANVLKSISSQFTRLNVEVLIEQFDAICANSKETQQAAAAADAPAGAVPAAQGT
LAQYGQDLTARARDGKIDPVVGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLA
LRIADGDVPEPLQNIQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSATPIILFIDEI
HTLIGAGGQQGTGDAANLLKPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVHE
PDEAKAILMLRSTVSPLETHHQVLLLDEAVSAAVKLSHRYIPARQLPDKAVALLDTACAR
VAVSQSAPPAQLEDCLRHLAALDVEIEIAEREARVGAGEAERVTALRAERDAYETKREAL
SRRWEEERSLVQEIIRLRAALFAAGDEDTAELRGQLAEQQQALNALQGDEPLLFAAVDEN
VVAAVVSDWTGIPLGRMVKNEIDAVLNLADTLNQRVIGQRHGLDLIARRVKTSRAKLDDP
NKPVGVFMLCGPSGVGKTETALALAESLYGGEQNVITINMSEFQEAHTVSTLKGAPPGYV
GYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTII
ILTSNVGTDLISAMCADPELMPEPDALSGALRQPLLEVFPPALLGRLLVVPYYPLSDEML
GQIVRLQLKRIQRRLEENHSIISEFDDSVVEQIVQRCTEVESGGRMVDAILTNTLLPQMS
QILLTASRSDEQYRRLHVTCEQGEFHCQFAA