Protein Info for EX28DRAFT_0805 in Enterobacter asburiae PDN3

Annotation: type VI secretion protein, VC_A0110 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF05947: T6SS_TssF" amino acids 1 to 620 (620 residues), 728.2 bits, see alignment E=4.2e-223 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 623 (619 residues), 615.8 bits, see alignment E=5.3e-189

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 96% identity to enc:ECL_01549)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>EX28DRAFT_0805 type VI secretion protein, VC_A0110 family (Enterobacter asburiae PDN3)
MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRV
QMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAEIEPDSSRGDLSKGFIVPRGTMMDSLA
LKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPLAQLGLSQRGIGSALRIRIACDGP
QNLGHLDFDRLEFFLGGPDIEALKLLELVMEHHAGIVCQTVSPQPQRQLLASDALRQEGF
EPDQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSTLIERCEGEKAFDIFILLDKS
DEQLERVVDASHLALHCTPVINLFPKVAARQKLNEGQHEYHLVVDNIRPLDYEIYAVKKI
YGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRTGYIGSEVFV
SLVDEQHAPWQENLRYISAEVLCTSRDLPLMLQQELGQFIMADSMPVKSLTLRKGPTPPR
PALAEGFSTWRLISQLQMNYLSLMDSENEDGAAALRQLLGLYANLAETPVARQVEGVRHC
VLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVMERLFARLVSINSFTEF
TLKSQQRGEIGYWAPRMGKRALI