Protein Info for EX28DRAFT_0790 in Enterobacter asburiae PDN3

Annotation: type VI secretion protein IcmF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1206 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 472 to 493 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1206 (1192 residues), 1160.8 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 211 to 480 (270 residues), 298.5 bits, see alignment E=6e-93 PF06761: IcmF-related" amino acids 532 to 833 (302 residues), 301.9 bits, see alignment E=9.6e-94 PF06744: IcmF_C" amino acids 1089 to 1192 (104 residues), 87 bits, see alignment E=1.4e-28

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 96% identity to enc:ECL_01536)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1206 amino acids)

>EX28DRAFT_0790 type VI secretion protein IcmF (Enterobacter asburiae PDN3)
MLTTLLSILTNRILWSFLGVTALAAVIWMIGPLLSIVDTRPLESEQNRIISIAVVYLLWA
QGHILPRLYNAWLNRKLMDKLKENTASQEAADPQKRLNSEEQILASRFDEAAQMLKKAHF
SKAGQGAQWTQRFSTQYLYQLPWYVIIGAPGSGKTTALVNSGLQFPLADRFGKTALRGIG
GTRNCDWWFTNEAVLLDTAGRYTTQESEQVQDAGEWLEFMGLLRKYRRRQPINGVIITIS
ISDLLTQSAEASRQQAVNLRQRLSELHEQLGIRFPVYVMVTKADLLKGFRAWFADYDKAQ
RDQIWGFTLPWEQTKHADYDLMGNFQQEFSLLQQRLDAGLPETMLKEHDAKTRAEAYLFP
QEFAALRPLLADYLSTVFARSNFETEFSPRGIYFASGTQEGMPFDRVMGELNRALSLPEG
GEADNWDSVSKEAPIPGAKGQSFFIKNLLQNVIFQEAGIAGENRWWELRNRAVIWSGYAA
LLALLAILGGLWLTSYAKNKAYLEEVDAKVPLLDQQSKALQNQTQRDLFDLLPLLNGLVD
LPKSDAFDVNDPPVSRRMGLYRGDDVSDAAQSLYQKALDQMLLPAVAMHITTWLRNDNGS
DVEYSYEALKAYQMLYQPKHYDGKFLHSWVMLNLQRNLPQNVTKAQLQQLEWHLTQLLEP
KIQASPYAQDESLVARERAMIGQQPLSTRVYGRLKRLLEHDDNLRPVSLSDLGGPQSELV
FSRKSGKPVSEGVPGLYTPDGYWKSFNGQIDSVTTALHEDDAWVLGAATAQEDKQQIDNA
VRQLYMRDFIANWDRFLADIQLNNSADLSQRINTARLLSGANSPLRRLVQNLSQVLTLSR
NAPAPEDADKAQAQSNRATRTLEALFSNNDAAPTQAAVVTQAPEQLVTDHYAPMIELAQP
LEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPAPGGEAISRLQASAGRLPGGLQTM
FSNMAVGASSDTQRRDLENVRKRINVEVGGFCRQAIAGRYPLVRSASTEVTPDDLARMFA
PGTGLMDAFFRDNLTNKVDTTQANWRFMPGIDGKTLPGSEGLLRPFQQAQSIRDAFFANG
ATTPSFKVTVRTVRMDNTILNLTLDVDGQLLRYSHGPQAVQIMNWPGPGGTNQVRMQLGL
ANGSTATLVTNGAWALNRFFDKASTSPGAGSLSRQATFSVDGHQVTLEFAPNSIRNPFQL
PRFSCP