Protein Info for EX28DRAFT_0752 in Enterobacter asburiae PDN3

Annotation: outer membrane lipoprotein, Slp family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR00752: outer membrane lipoprotein, Slp family" amino acids 7 to 189 (183 residues), 253.2 bits, see alignment E=5e-80 PF03843: Slp" amino acids 20 to 168 (149 residues), 156.9 bits, see alignment E=1.3e-50

Best Hits

Swiss-Prot: 81% identical to YEAY_ECOLI: Uncharacterized lipoprotein YeaY (yeaY) from Escherichia coli (strain K12)

KEGG orthology group: K07285, outer membrane lipoprotein (inferred from 93% identity to enc:ECL_01497)

Predicted SEED Role

"Starvation lipoprotein Slp paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>EX28DRAFT_0752 outer membrane lipoprotein, Slp family (Enterobacter asburiae PDN3)
MAVQTKVVRLIIAGAVAIALSGCVSVPDAIKGSSPTPQQDLVRVMNAPELYVGQEARFGG
KVVDVQNQQGKTRLEIATVPLDSGARPVLGEASRGRIYADVSGFLDPVDFRGQLVTVVGP
ITGAVQGKIGSTPYKFMTMQVNGYKRWRLAQQVVMPPQPMEPWMWGPHPYRYGYPGWGWY
NPGPAQVQTIVTE