Protein Info for EX28DRAFT_0645 in Enterobacter asburiae PDN3

Annotation: aromatic amino acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 signal peptide" amino acids 5 to 9 (5 residues), see Phobius details amino acids 28 to 29 (2 residues), see Phobius details transmembrane" amino acids 10 to 27 (18 residues), see Phobius details amino acids 37 to 58 (22 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details amino acids 217 to 235 (19 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details amino acids 310 to 329 (20 residues), see Phobius details amino acids 335 to 356 (22 residues), see Phobius details amino acids 376 to 399 (24 residues), see Phobius details PF03222: Trp_Tyr_perm" amino acids 1 to 391 (391 residues), 465.6 bits, see alignment E=1.6e-143 PF01490: Aa_trans" amino acids 7 to 229 (223 residues), 32.9 bits, see alignment E=3e-12 TIGR00837: aromatic amino acid transport protein" amino acids 7 to 383 (377 residues), 463.1 bits, see alignment E=4.3e-143

Best Hits

Swiss-Prot: 82% identical to TYRP_ECOLI: Tyrosine-specific transport protein (tyrP) from Escherichia coli (strain K12)

KEGG orthology group: K03834, tyrosine-specific transport protein (inferred from 96% identity to enc:ECL_01384)

Predicted SEED Role

"Tyrosine-specific transport protein" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>EX28DRAFT_0645 aromatic amino acid transport protein (Enterobacter asburiae PDN3)
MKNRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFGMTLLLLGTLWALMCYTALLLLEVYQH
VPADTGLGSLAARYLGRYGQWITGFSMMFLMYALTAAYISGAGELIASSVNDWFGSDITP
ATGAIFFALIGGGVVCVGTSLVDLFNRFLFSAKILFLIIMLVLLAPHVHKVNLLTLPLEK
GLALSAIPVIFTSFGFHGSVPSIVSYMNGDIRKLRRVFVIGSAIPLIAYIFWQLVTLGSI
DSSTFIGLMAQHAGLNGFLLALREVVTSPHVELAVHLFADLALATSFLGVALGLFDYLAD
LFQRRNTAAGRLQTGAITFLPPLAFALFYPRGFVMALGYAGVALSILALLLPSLLAWKSR
QQHPQQGYRVAGGKPLLCVVFGCGVVIILVQALIAAGMLPEVG