Protein Info for EX28DRAFT_0620 in Enterobacter asburiae PDN3

Annotation: Flagellar protein FliT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF05400: FliT" amino acids 21 to 105 (85 residues), 74.7 bits, see alignment E=4.4e-25

Best Hits

Swiss-Prot: 57% identical to FLIT_CITK8: Flagellar protein FliT (fliT) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: K02423, flagellar protein FliT (inferred from 69% identity to enc:ECL_01354)

Predicted SEED Role

"Flagellar biosynthesis protein FliT" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>EX28DRAFT_0620 Flagellar protein FliT (Enterobacter asburiae PDN3)
MNNPSAALSHWQALHAQSIAMLNLAHSGQWDALIEQEMHYVQLVEKISQTPIMSCPPAQV
EQARALLEMILENENALKALLKVRMDELRNLIDQTGKQQSITSTYGKLSGNILYPESFTR
DTQL