Protein Info for EX28DRAFT_0615 in Enterobacter asburiae PDN3

Annotation: flagellar motor switch protein FliG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 TIGR00207: flagellar motor switch protein FliG" amino acids 3 to 332 (330 residues), 498.6 bits, see alignment E=5e-154 PF14842: FliG_N" amino acids 4 to 104 (101 residues), 101.3 bits, see alignment E=8.9e-33 PF14841: FliG_M" amino acids 116 to 188 (73 residues), 86.5 bits, see alignment E=2.4e-28 PF01706: FliG_C" amino acids 219 to 324 (106 residues), 129 bits, see alignment E=1.9e-41

Best Hits

Swiss-Prot: 97% identical to FLIG_ECOL6: Flagellar motor switch protein FliG (fliG) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02410, flagellar motor switch protein FliG (inferred from 99% identity to enc:ECL_03221)

Predicted SEED Role

"Flagellar motor switch protein FliG" in subsystem Bacterial Chemotaxis or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>EX28DRAFT_0615 flagellar motor switch protein FliG (Enterobacter asburiae PDN3)
MSNTLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQILSAAMANVRQISNKQLTEVLAEF
EQEAEQFAALNINANDYLRSVLVKALGEERASSLLEDILETRDTASGIETLNFMEPQSAA
DLIRDEHPQIIATILVHLKRGQAADILALFEERLRHDVMLRIATFGGVQPAALAELTEVL
NNLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL
VEVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLRNMSQRAADILRDDLANRGPVRLS
QVENEQKAILLIVRRLAETGEMVIGSGDDTYV