Protein Info for EX28DRAFT_0584 in Enterobacter asburiae PDN3
Annotation: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 88% identical to FUMB_ECOLI: Fumarate hydratase class I, anaerobic (fumB) from Escherichia coli (strain K12)
KEGG orthology group: K01676, fumarate hydratase, class I [EC: 4.2.1.2] (inferred from 99% identity to enc:ECL_03252)MetaCyc: 88% identical to fumarase B (Escherichia coli K-12 substr. MG1655)
D(-)-tartrate dehydratase. [EC: 4.2.1.81]; Fumarate hydratase. [EC: 4.2.1.81, 4.2.1.2]
Predicted SEED Role
"Fumarate hydratase class I, anaerobic (EC 4.2.1.2)" in subsystem Serine-glyoxylate cycle (EC 4.2.1.2)
MetaCyc Pathways
- superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (25/26 steps found)
- mixed acid fermentation (16/16 steps found)
- superpathway of glyoxylate bypass and TCA (11/12 steps found)
- superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (18/22 steps found)
- TCA cycle I (prokaryotic) (9/10 steps found)
- TCA cycle VI (Helicobacter) (8/9 steps found)
- partial TCA cycle (obligate autotrophs) (7/8 steps found)
- superpathway of glyoxylate cycle and fatty acid degradation (11/14 steps found)
- TCA cycle III (animals) (8/10 steps found)
- TCA cycle VIII (Chlamydia) (5/6 steps found)
- TCA cycle II (plants and fungi) (7/9 steps found)
- TCA cycle V (2-oxoglutarate synthase) (7/9 steps found)
- reductive TCA cycle I (8/11 steps found)
- incomplete reductive TCA cycle (5/7 steps found)
- TCA cycle IV (2-oxoglutarate decarboxylase) (6/9 steps found)
- TCA cycle VII (acetate-producers) (6/9 steps found)
- reductive TCA cycle II (8/12 steps found)
- pyruvate fermentation to propanoate I (3/7 steps found)
- anaerobic energy metabolism (invertebrates, mitochondrial) (5/10 steps found)
- superpathway of anaerobic energy metabolism (invertebrates) (10/17 steps found)
- (S)-lactate fermentation to propanoate, acetate and hydrogen (7/13 steps found)
- L-glutamate degradation VIII (to propanoate) (3/11 steps found)
- methylaspartate cycle (8/19 steps found)
- Methanobacterium thermoautotrophicum biosynthetic metabolism (23/56 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Citrate cycle (TCA cycle)
- Reductive carboxylate cycle (CO2 fixation)
Isozymes
Compare fitness of predicted isozymes for: 4.2.1.2
Use Curated BLAST to search for 4.2.1.2 or 4.2.1.81
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (549 amino acids)
>EX28DRAFT_0584 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (Enterobacter asburiae PDN3) MSNKPFFYQNPFPLSHDDTEYYLLTKEHVSVAEFEGQEILKVEPEALTLLAQQAFHDAAF MLRPSHQKQVAAILNDPEASQNDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIMGKKGQR VWTGGGDEAALSQGVYNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYSVDGDEYKF LCMAKGGGSANKTYLYQETKALITPAKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAEA TLKTVKLASTRYYDALPTEGNEHGQAFRDVQLEQELLQEAQNLGLGAQFGGKYFAHDIRV IRLPRHGASCPIGMGVSCSADRNIKAKINRDGIWIEKLEHNPGQYIPESLRQQGEGDVVS INLDKPMNEILAQLSAHPVSTRLSLNGTIIVARDIAHAKLKELLDNGEELPQYVKDHPIY YAGPAKTPEGYASGSLGPTTAGRMDSYVDLLQSHGASMIMLAKGNRSQQVTDACHKHGGF YLGSIGGPAAVLAQNSIKSLECVAYPELGMEAIWKIEVENFPAFILVDDKGNDFFQQIQN KQCAGCSQR