Protein Info for EX28DRAFT_0408 in Enterobacter asburiae PDN3

Annotation: ABC-type sugar transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 PF00005: ABC_tran" amino acids 29 to 178 (150 residues), 104.5 bits, see alignment E=7.8e-34 amino acids 280 to 434 (155 residues), 71.2 bits, see alignment E=1.5e-23

Best Hits

Swiss-Prot: 96% identical to MGLA_ECOLI: Galactose/methyl galactoside import ATP-binding protein MglA (mglA) from Escherichia coli (strain K12)

KEGG orthology group: K10542, methyl-galactoside transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 98% identity to ent:Ent638_2749)

MetaCyc: 96% identical to D-galactose/methyl-galactoside ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-18-RXN; TRANS-RXN0-541

Predicted SEED Role

"Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)" in subsystem Lactose and Galactose Uptake and Utilization (EC 3.6.3.17)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>EX28DRAFT_0408 ABC-type sugar transport system, ATPase component (Enterobacter asburiae PDN3)
MVSTNTQSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF
GIYQKDSGSILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGVF
VDQDKMYRDTKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYDAKIVIMDEPTSSL
TEKEVNHLFTIIRKLKDRGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLEGLDMDK
IIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGA
KRTDIVETLFGIREKAQGTITLHGKKINNHNANEAINNGFALVTEERRSTGIYAYLDINF
NSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW
LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKNKGIIIISSEMPELLGITDRILVMS
NGLVAGIVDTKTTTQNEILRLASLHL