Protein Info for EX28DRAFT_0391 in Enterobacter asburiae PDN3

Annotation: elongation factor P-like protein YeiP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 TIGR02178: elongation factor P-like protein YeiP" amino acids 80 to 266 (187 residues), 324.7 bits, see alignment E=1.2e-101 PF08207: EFP_N" amino acids 81 to 139 (59 residues), 53.5 bits, see alignment E=2.9e-18 PF01132: EFP" amino acids 149 to 200 (52 residues), 43.7 bits, see alignment E=3.2e-15 PF09285: Elong-fact-P_C" amino acids 210 to 265 (56 residues), 72.5 bits, see alignment E=2.7e-24

Best Hits

KEGG orthology group: K02356, elongation factor P (inferred from 80% identity to ecx:EcHS_A2309)

Predicted SEED Role

"Translation elongation factor P-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>EX28DRAFT_0391 elongation factor P-like protein YeiP (Enterobacter asburiae PDN3)
PGMGLEMDGAVQHAPQSGRQSIKCSLSLTIARAVGHRAHSNTFCVLIAKATNSSCLKGRA
RVIWRDIFLPPVNRITAMPRANEIKKGMVLNYNGKLLIVKDIDIQAPSARGAATLYKMRF
ADVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYIDGNEYVFMDKEDYTPYIFTKDQIEEE
LLFIPEVGMPDMQVLTWDGVLLALELPQTVDLEIVETAPGIKGASASARNKPATLTTGLV
VQVPEYLSAGEKIRIHIEEKRYMGRAD