Protein Info for EX28DRAFT_0346 in Enterobacter asburiae PDN3

Annotation: molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 TIGR00200: competence/damage-inducible protein CinA N-terminal domain" amino acids 1 to 396 (396 residues), 527 bits, see alignment E=3e-162 TIGR00177: molybdenum cofactor synthesis domain" amino acids 2 to 167 (166 residues), 117.3 bits, see alignment E=5.7e-38 PF00994: MoCF_biosynth" amino acids 6 to 170 (165 residues), 117.3 bits, see alignment E=2.3e-38

Best Hits

Swiss-Prot: 81% identical to CINAL_ECODH: CinA-like protein (ECDH10B_2409) from Escherichia coli (strain K12 / DH10B)

KEGG orthology group: K03742, competence/damage-inducible protein CinA (inferred from 94% identity to enc:ECL_03536)

Predicted SEED Role

"Competence/damage-inducible protein CinA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>EX28DRAFT_0346 molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain (Enterobacter asburiae PDN3)
MINVEMLSTGDEVLHGQIIDTNAAWLADLFFEQGLPLTRRNTVGDNLESLVAILRERSEQ
CDVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLSQMERFFSERGRVMAPSNRKQAE
IPASAELVDNPVGTACGFAMQLNRCLMFFTPGVPSEFKVMVEQQILPRLRDRFTLPEPPL
CLRLTTFGRSESDLAQSLDPLPLPPGVSMGYRSSMPIIELKLTGPAEQKEAMLALWPEVQ
RVAGESLIFEGTEGLPAQIATHLQSRQLSVTLSEQFTGGLLALQLSRVNAPLLASEVVPF
QQETLAQTARWASERRVKHFAGLALFVGGLDEEYLNFALATPEGTWALRVKMSITRHSLA
VRQEVCAMMALNMLRRWLNGKEVASEHGWINVVESLFIE