Protein Info for EX28DRAFT_0282 in Enterobacter asburiae PDN3

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 48 to 71 (24 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 328 (25 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 249 (230 residues), 68.2 bits, see alignment E=3.2e-23 amino acids 223 to 391 (169 residues), 58 bits, see alignment E=4.1e-20

Best Hits

Swiss-Prot: 87% identical to YFCJ_SALTY: Uncharacterized MFS-type transporter YfcJ (yfcJ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 95% identity to enc:ECL_03671)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>EX28DRAFT_0282 Arabinose efflux permease (Enterobacter asburiae PDN3)
MTAVTQTETTPSANVSLFRIAFAVFLTYMTVGLPLPVIPLFVHQELGYGNTMVGIAVGIQ
FLATVLTRGYAGRLADQHGAKRSALQGMFACGLAGGAWLLAALLPVDAAYKFTLLVLGRL
ILGFGESQLLTGTLTWGMGLVGPARSGKVMSWNGMAIYGALAAGAPLGLLINSQFGFAAL
AATTMVLPLLAWAFNGSVRKVPAHKGERPSLWSVVGQIWQPGLGLALQGVGFAVIGTFVS
LYFMSRGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAVASLMIETVGLLLLWNAP
VASVALLGAALTGCGCSLIFPALGVEVVKRVAPQVRGTALGGYAAFQDISYGVTGPLAGV
LATSFGYPSVFLAGAVSAVVGIVVTLVAFRRS