Protein Info for EX28DRAFT_0157 in Enterobacter asburiae PDN3

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 47 to 70 (24 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 279 (258 residues), 92.5 bits, see alignment E=2.6e-30 amino acids 225 to 396 (172 residues), 43.1 bits, see alignment E=2.7e-15 PF00083: Sugar_tr" amino acids 48 to 189 (142 residues), 33.1 bits, see alignment E=3e-12

Best Hits

Swiss-Prot: 40% identical to YGAY_ECOLI: Putative uncharacterized transporter YgaY (ygaY) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 79% identity to bbr:BB2331)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>EX28DRAFT_0157 Arabinose efflux permease (Enterobacter asburiae PDN3)
MSLTSALPSADMPRSMVWLFATASGLSVANVYYAQPLLDALANDFGISHAAVGGVVTATQ
IGCALALLLVVPLGDKVDRRRLMAVQLIALVVALVSVSMAQSSSALLIGMLATGMLGTAM
TQGLIAYAASAASPHEQGRVVGAAQGGVFIGLLLARVFAGGISDIAGWRGVYLCAAALML
MIALRLWWRLPALPAVTATMSYPRLIGSMLTLLRQEKVLQIRGVLALLMFASFNIFWSAL
VLPLSAPPFNFSHTAIGAFGLAGAVGALAAGRAGRWADRGYAQRSSAAALSILLLAWWPL
SLMDRSLGILLIGIILLDLGGQALHVTNQSMIFRTRPEAHSRLVGLYMLFYAVGSGLGAL
GTTMTYACAGWPGVCLLGASVSLLALVFWWLTRASHRCPRDNPD