Protein Info for EX28DRAFT_0127 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 112 to 133 (22 residues), see Phobius details PF13560: HTH_31" amino acids 16 to 53 (38 residues), 32 bits, see alignment 2.5e-11 PF13413: HTH_25" amino acids 18 to 78 (61 residues), 50.4 bits, see alignment E=3.2e-17 PF01381: HTH_3" amino acids 19 to 53 (35 residues), 32.7 bits, see alignment 1.2e-11 PF13464: RodZ_C" amino acids 256 to 328 (73 residues), 86.9 bits, see alignment E=1.4e-28

Best Hits

Swiss-Prot: 83% identical to RODZ_ENT38: Cytoskeleton protein RodZ (rodZ) from Enterobacter sp. (strain 638)

KEGG orthology group: None (inferred from 89% identity to enc:ECL_03858)

Predicted SEED Role

"FIG021952: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>EX28DRAFT_0127 Uncharacterized protein conserved in bacteria (Enterobacter asburiae PDN3)
MNTEATHDQHEALSTGVRLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTF
LRGYIRSYAKLVHIPENELLPMMEKQAPVRAAKVAPMQTFSLGKRRKKRDGWLMSFTWLV
LFVVIGLTGAWWWQNHKAQQEEITTMADQSSAELNQAGSENGQSVPLNTDGAASSSEPQT
AAPDASATDAAQAPVATANTAAPQAQDQNAVVAPSQANVDTAANAPAATQPADNSAANLP
TSPAGTATAADPNALVMNFSADCWLEVTDATGKKLFSGLQRKDGTLNLTGQAPYKLKIGA
PAAVQIQYQGKPVDLSRFIRTNQVARLTVNAEQSAAQ