Protein Info for EFB2_01082 in Escherichia fergusonii Becca

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1129 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 49 to 72 (24 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details PF06761: IcmF-related" amino acids 413 to 726 (314 residues), 162.1 bits, see alignment E=3.4e-51 PF21070: IcmF_helical" amino acids 878 to 982 (105 residues), 144.2 bits, see alignment E=2.3e-46 PF06744: IcmF_C" amino acids 986 to 1090 (105 residues), 79.3 bits, see alignment E=3.5e-26

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 98% identity to ecp:ECP_2814)

Predicted SEED Role

"probable membrane protein YPO1482"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1129 amino acids)

>EFB2_01082 hypothetical protein (Escherichia fergusonii Becca)
MVPGLNRLRPRSVSGPAIVMTVAVVVALCTFIHRKPALLGVEPGSSQQMYWMAGVIAAGV
VFLIIMGVYHLLNRHAAVQSFELRRQLAAGDDYRAVTTKKADRRHPAMVELAAFLRDRYG
PFWRRKIRLLLVTGEPEQAEAIAPGLTGQHWLEGDHTVLIYGGRPSAEPDVTLLAALKKL
RRSRPLDGIIWPLTEEQSRQTAQLDKGWRELVNGSKRLGFQAPLYLWQVCDNGDYQTGRP
LQSVGCLLPERCTPEQLAAMLEAQTLPLTEQGMSQLLADNRHDFLLRLAHTLAERGIAHW
QSVLKPLLAGGAFSSLRLRGLMFSPPLAAVPEAAPHAWLPSPVWAGITGDNARGRAVGFP
WLRTALMSAVCVLVIWGAGMTTSFFANRALVQETGIQTARALDTRLPLAEQLVALHTLQG
ELERLQYRIREGAPWYQRFGLERNQQLLAAAFPGYAQAANRLVRDVAVDHLQQQLNAFVA
LPPNSPQRTATGEQRYKQLKALLMTSRPEKADAAFFSTTLMADGLRYENIPEGVRQNVLP
SLLTFWMANLPEHPQWETSPPPELTGAVRKILLRQIGVRNAENTLYQNVLQQVSRNYADM
TLADMTGDTLTESLFSTEQTVPGMFTRQAWEGQVREAIEQVVTARREEIDWVLSDRQQDT
SADISPDTLRNRLTSRYFTDFAGSWLAFLNSIRWKKEDSLSGILDQLTLMADARQSPLIA
LTDTLAWQAATGRENRGLSDSLAKSAQELFNGKEKTPQQSREGDVPVGPLDKTFAPLLRL
LGDKSGSGGGDTQLSLQTYLTRVTRVRLKLQQVTNAPDPQEMTQQLAQTVLQGKTVDLTD
TRDYGRLIAASLGEEWNGFGQALFVRPVEQSWRQVLTPAADSLNRQWQRAIVSHWNQDFA
GRYPFKASQNDASLPLLAQYLRDDGRINQFIAANLSGVLKREGRYWVADAMNTQGLTVNP
DFIRALNRLRDVADTAFASGDAGIHFELRAKPARDVMKTHLVIDGQELEYFNQKERWQRF
NWPDEQWQPGASLSWTSTQAMERILADYRGSWSLIRLLEQAQVTPVDSSTFKVVWKAQDG
LPLNYLLRVEQGKGPMALLELKNFRLPGQVFLTGKSMKDAEEYGEDADE