Protein Info for EFB2_00785 in Escherichia fergusonii Becca

Annotation: putative quinol monooxygenase YgiN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 PF03992: ABM" amino acids 1 to 86 (86 residues), 65.3 bits, see alignment E=2.3e-22

Best Hits

Swiss-Prot: 98% identical to YGIN_SHIFL: Probable quinol monooxygenase YgiN (ygiN) from Shigella flexneri

KEGG orthology group: None (inferred from 98% identity to eco:b3029)

MetaCyc: 98% identical to putative quinol monooxygenase YgiN (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"FIG00896075: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (104 amino acids)

>EFB2_00785 putative quinol monooxygenase YgiN (Escherichia fergusonii Becca)
MITVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI
VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQPGL