Protein Info for ECD_03229 in Escherichia coli BL21

Annotation: inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 49 to 70 (22 residues), see Phobius details amino acids 77 to 82 (6 residues), see Phobius details amino acids 86 to 115 (30 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 289 to 315 (27 residues), see Phobius details amino acids 322 to 343 (22 residues), see Phobius details amino acids 370 to 397 (28 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details PF10797: YhfT" amino acids 6 to 431 (426 residues), 574 bits, see alignment E=1.1e-176

Best Hits

Swiss-Prot: 100% identical to YHFT_ECOLI: Uncharacterized protein YhfT (yhfT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3377)

Predicted SEED Role

"FIG006427: Putative transport system permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>ECD_03229 inner membrane protein (Escherichia coli BL21)
MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYMNRREAGSIAFGLSIGF
VASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQLLT
ALPVDVLGSLGALSSPVVSAFALFPLVAIFYQFGWKQSLIAAVVVLMTRVVVVRYFPHLN
PESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIAIVGALIA
AVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVPLIATTALAT
GVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRYPSVRNASDNIR
NAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQKMAAPVVAVMITGI
LLNVLYWLGLFVPA