Protein Info for ECD_00679 in Escherichia coli BL21

Annotation: putative fimbrial-like adhesin protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00419: Fimbrial" amino acids 31 to 188 (158 residues), 102 bits, see alignment E=2e-33

Best Hits

Swiss-Prot: 78% identical to YBGD_ECOLI: Uncharacterized fimbrial-like protein YbgD (ybgD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to sfx:S0591)

Predicted SEED Role

"Uncharacterized fimbrial-like protein ygiL precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>ECD_00679 putative fimbrial-like adhesin protein (Escherichia coli BL21)
MFKGQKTLTALAISLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTT
SHINQSHHSDAVAVDLRLVNCDLENSSNGSGGKISKVAVTFDSSAKTTGADPILNNTSTG
EATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTAN
ATYVLDYK