Protein Info for DZA65_RS22230 in Dickeya dianthicola ME23

Annotation: YihA family ribosome biogenesis GTP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 72 to 255 (184 residues), 250 bits, see alignment E=6.4e-79 PF01926: MMR_HSR1" amino acids 90 to 208 (119 residues), 68.1 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: K03978, GTP-binding protein (inferred from 96% identity to ddd:Dda3937_01113)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>DZA65_RS22230 YihA family ribosome biogenesis GTP-binding protein (Dickeya dianthicola ME23)
MRRNLAESKPIKKCSKSSVPVLFFQPVKTVTPRQKQINTAFPIGCRYNQPHKTVIQTETQ
TVTQQYNYHMTHFVTSAPDIRHLPADSGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT
PGRTQLINLFEVADGVRLVDLPGYGYAEVPEEMKRKWQRALGEYLQKRNCLKGLVVLMDI
RHPLKDLDQQMLEWAVDVGLPVLVLLTKADKLAQGARKSQLNMVREAVLPFTGDIQVEAF
SSLKKTGVDKLRQKLDSWFSTLPSAELQLQPESDQ