Protein Info for DZA65_RS21865 in Dickeya dianthicola ME23

Annotation: cellulose biosynthesis protein BcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1315 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF13432: TPR_16" amino acids 277 to 332 (56 residues), 31.5 bits, see alignment (E = 5.8e-11) amino acids 388 to 442 (55 residues), 15.8 bits, see alignment (E = 4.8e-06) PF14559: TPR_19" amino acids 468 to 532 (65 residues), 30.5 bits, see alignment 1.1e-10 PF05420: BCSC_C" amino acids 919 to 1311 (393 residues), 356.3 bits, see alignment E=5.3e-110

Best Hits

KEGG orthology group: None (inferred from 92% identity to dze:Dd1591_4081)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y3N1 at UniProt or InterPro

Protein Sequence (1315 amino acids)

>DZA65_RS21865 cellulose biosynthesis protein BcsC (Dickeya dianthicola ME23)
MKMTTLTARIRQSLSLTGVVVGGVLSASALAAQANPALQALFEQADYWHQRSHDDLARDA
LQKILRVDADNPRALYLMALYAQNNGDSAEATKWRERLSKASPQDPLLQALDNARQASTI
PQAQLALARQQARSGNISASLQTWRNLFSGTQPPAGIAAEYYLTMAGDRTLLPQAIDLLR
EFAAAHPQDTNAAVALGKALTYQEPTRREGVQILSGLASGSADADQAMRQALLWLGPKAD
DAPFYQLYQQRHPQDTAVMDHYRKNVGGSEKDKGFTALNSGDLSSAQTAFNQVLQANPED
ADALAGMGYAAQRRGDFAAAASYLERAARQGGENSAQRQQQAEDARFYAQLANAQQAMKS
GDTAQALTLSEPLAQAGGDKGLTAKLFRADVLRRANNFPQAERLYRDVLQTDADNRNAKE
GLYYVLREQNRGDEANTLFAALPENVRRSMAPRPVATSAPVRNDAKQALAAGDAARAVGL
LQQGVQRFPNDGWLKLDLARIYQQQSNTAAATALMQPLFRAGAGADDLYAAALFASENNA
WQQASTLLSRIPPRNQNEETRSLARRVNFNLQMATAQVYLSRGENAAAANTLRALSVTPP
DNPADAGKLAQSLAAAGDTAAAVALVRSNMQRGVQGNAGDYAAQVGVLNQAGLSDDAQSW
LNRPELVARSSAAQLDGLRTGFVVREADRLRENQQYAQAYDKLARALQRDPKNTDLMFAM
ARLYQSGKMHKEAADVYDYLLLHDNPAQEARVGAINVALERNDLQKAHALSTGLQGEQTP
ERLLLLARIADAEGNRDQALSYLRTARSKAVGLEGAAPGKTPAIGGLAMTDNPFITRSTP
AATRVASSPSTYGSVMPWQQGSVAAAGDTAVVAGVTPQQRQAATLTQINGMMDDLERDTV
GWVQTGVQIRSRDGESGLSRLTEAKAPLTWSSGSFGDARINFSVTPITMNAGAADATTSR
RFGTGALSQSITAAVQTLQNERANGANVPNLSFNDLNPLTTAGLTNLQNMQGMLQNSTRK
PNIDLVNVDSPGGQRASGAELNLALIGKNYKVDFGSTPLGQELNTLVGGVQWSPKLTDFL
TLVVTGERRAVTDSLLSYVGAKDALTGKRWGQVTKNGGNVLLSYDNGDVGFYGGGGAYSY
LGENVKNNTSVMANAGAYIRPFHDRDRELKTGVSLSWMNFSKNLGYYSYGQGGYFSPQDY
VSVSLPVEWSQKYDDLSVKAGVAVGFQSYSRDRSAYFPNNPDWQTLLESAESVGLAKESH
YAGESKSGIGYNAHVGADYRVTKDVTVGGQMSYDTFGNYNETTAQLYFRYGLGGK