Protein Info for DZA65_RS20990 in Dickeya dianthicola ME23

Annotation: IS256 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 PF00872: Transposase_mut" amino acids 10 to 373 (364 residues), 336.5 bits, see alignment E=9.8e-105

Best Hits

Swiss-Prot: 46% identical to TRA3_RHIME: Transposase for insertion sequence element ISRM3 (R00164) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 99% identity to dda:Dd703_3078)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>DZA65_RS20990 IS256 family transposase (Dickeya dianthicola ME23)
MSQPFDFDKALKALQSGQALTGKDGILTPLIKQLTEAALSAELDSHLAQDVEANRKNGSG
KKTIKAPTGNFELATPRDRNGTFEPQLVKKHQTTLSDEIEHKIIRLFALGMSYQDISREI
EDLYAFSVSTATISAVTDKVIPELKQWQQRPLEQVYPFVWLDAIHYKIREDGRYQSKAVY
TVLALNLEGKKEVLGLYLSESEGANFWLSVLSDLQNRGVKDILIACVDGLTGFPEAINSI
YPQTEVQLCVIHQIRNSIKYVASKHHKAFMTDLKPVYRAVSKEAAEMALDELEAKWGQQY
PVVLQSWRRKWDNLSAYFRYPANIRKVIYTTNAIESVHRQFRKLTKTKGAFPNENSLLKL
LYLGLMNAQGKWTMPIQSWNLTLSQLAIYFEGRLNNVMTL