Protein Info for DZA65_RS20850 in Dickeya dianthicola ME23

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 664 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 62 to 81 (20 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details PF00884: Sulfatase" amino acids 279 to 568 (290 residues), 80 bits, see alignment E=1e-26

Best Hits

KEGG orthology group: None (inferred from 90% identity to dze:Dd1591_0242)

Predicted SEED Role

"Phosphoglycerol transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y587 at UniProt or InterPro

Protein Sequence (664 amino acids)

>DZA65_RS20850 LTA synthase family protein (Dickeya dianthicola ME23)
MDNYQQHALTFLKTLWRQVLLLSLLLSGARLVMFSVFADAQQLQNYDSAVRLMWLTGLRY
DLRAVSILLAPLLVIGLLISLHRIGWRWLQRIAPWYLGGCAFLVSLIAIINYFYYQTYHT
YIDIFAFGLIDDGPLAVLTTIWQDYPVVVSLLLVSLFAWLNGRLGRKTLLSVRQPRLLSR
QVFVVYLLISLLLFFAMIRGSLSTFPLRRNDSQISSVAILNKLAPNGLMASAWAMGDRGD
DIRFEPVTRTAGEQLRAQSGLTTLEARTPVNPWLAAHRPNVVMALMESMGSNMLVYDHLP
DNDMLSALRPHFASDFVFRHFVSEGNGTAPTFAALFFQSPIQNLSHSSAQYKMLDDTPYA
TYKKVGYKVIFITSGSRMWRNLGTYLPRLGVDEIYDQSSLMERYPESLGMLTNWGVPDEF
AFRLAQRLLAEAHQPLFISILTVTNHPPYKVPANYQPQPVHAGPEMMAHAEVNQQEQESI
AATYQYATHALGEFISAVKSSPVGESTLIAATGDHQMRRLKAQYPHEQFLDRAVPFYLYV
PKTILAQTTWRFDSLRPGSHKDIFPTLYAYSLSDTPYYALGGRNMLAEQDDATRAFGYNQ
VLWIDEQGVMPIGSNGRYLWDPANPMLTQSTPSAISAEQQQRTTAYPALLHWQINAREQG
VIDK