Protein Info for DZA65_RS20130 in Dickeya dianthicola ME23

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF00005: ABC_tran" amino acids 36 to 184 (149 residues), 119.1 bits, see alignment E=3.3e-38

Best Hits

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D0N8 at UniProt or InterPro

Protein Sequence (282 amino acids)

>DZA65_RS20130 ATP-binding cassette domain-containing protein (Dickeya dianthicola ME23)
MSQPIFELRSVNKNYYLDSAKRFFSRAQKTPAVNALNNINLQIYAGEIFVIVGLSGSGKS
TLLRTLNHLIPASSGAVIFQGQTLAALKDAELTALRRRHIGMVFQSFALFEERNVLDNVA
FGLEVAGVARDVRRQQARDMLAKVGLGDVAAHYPHQLSGGMQQRVGLARALVVNPTVLLM
DEAFSALDPIIRREMQSLLLSLQAESQRTLVFVTHDMEEALRLGSRIAIMEQGELVQVGK
PETLINAPATAYVRHFFSGVDVSRWQMAENYADIWATQSGQT