Protein Info for DZA65_RS18830 in Dickeya dianthicola ME23

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1280 PF19268: CIS_TMP" amino acids 5 to 267 (263 residues), 98.6 bits, see alignment E=2.7e-32 amino acids 870 to 1279 (410 residues), 243.9 bits, see alignment E=2.3e-76

Best Hits

Predicted SEED Role

"FIG00613892: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D6B7 at UniProt or InterPro

Protein Sequence (1280 amino acids)

>DZA65_RS18830 hypothetical protein (Dickeya dianthicola ME23)
MTQPHRIHTASLTLDFRHESEAERFERDAPRFVQQQLLPLIDALFDQFSPPHQLWVIDQL
SFDLGALPASDLESALLAALQRQLTEALRARPPSAPVPPPENRDVAADADFNADIDVDAA
EIQVLDGAAAQWRQLQFFLQHGVIPWHYPGRQGWRQADTRRHWLADAVRRHPTPLNRLLS
ASANPAGPIARLVSQLPASALNGWLEQLTPAYQDIALRCLAAQPEPEAMPAALRARLHRH
WHQRIHQALRQRRLQQELLPVWGTLLGDQRTRFLLALYACGQQPEVVRGIAQAVDDGTFD
DLLRLLAPQAQPFIQQVLRHPAWFRHPDAAAVPADPSGPLDQLLREFTLHYLLVQRGSQF
NKQRYMAGLVGRMAAHHNMERTDLLQTLYLRLAAWPGDHALKQPLLSLLTTLWGEIAWGE
MAPRARALPRLPGITPGAQPERRRPVAGETAGHRDAVAAETAVHTLRQQWADALHQADDA
ALNRVWRQCTPAMLLTLRPALTACGQQSQVRQRWVVRFSAATQYRLLTLLEPADAPFIRE
LMDDVRASQPAIAAHCAHAPGEPLLTHSLWSLTFSYLLAERGSEFNRQSYLNALLRQLAA
HHNLSRQALIDALLQRLRHTPADTVVRRALLTLLSRLRESDPPAPQTQPQRQSQPQPAAP
CHIDADLPPPAQPLLDAACYHYLYEVLVHGDPTRRFVPPDQAQTVWRAASSYAGADLLRC
LQQLQAHHPLLIQRWLAVSTHHPASWLRLCAALRPSQAAQLLAQLVALRQPAVNLHSLTT
TLDNVTRRLTVAQRQAFYGQMIDALAANRTPDWLAIRDAVSQSAPPSAVVPYQPVSAATP
DSPTPSAMDDASALTLLQRIAEHAPATLAADDITALAAALARLLPSQPEAVRRFLLPALQ
SADMTERLTDALPDTLHTALLLLLRRSDFLALHPYGRFIANLCHRHPAYRGASQALESLL
WRALYHSLFAAGSPADIAAFISHYLGKLAADWQQRSRQPSPAAFYRFLLQQAQAERLAAT
RTLTDRLQRLITDAGLDQDTPAITAVADADAVADSGQPPEHDIAAAPPLEPPDAAAAATP
DMTVKDMTVKDMAVKDMAVPVIIDWRGDETLPTDEPVSIANAGLVLAAPWLPRLLAKLAL
VRDGVFPQPDARYQAIHGLQYLVDQGRNCAEYQLALNKLLCGLPLNAPLPLTLPPDAAAR
DTLDALLAAILQHWNALGHTSVDGLRQTFLQREGTLWRQADSWKLEVVAGPFDMLLDRLP
WRYSTIKYPWMDRPLHVVWR