Protein Info for DZA65_RS18385 in Dickeya dianthicola ME23

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 646 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 321 to 340 (20 residues), see Phobius details PF17201: Cache_3-Cache_2" amino acids 36 to 320 (285 residues), 243.3 bits, see alignment E=9.6e-76 PF17202: sCache_3_3" amino acids 111 to 218 (108 residues), 93.1 bits, see alignment E=3.4e-30 PF00672: HAMP" amino acids 341 to 390 (50 residues), 45.5 bits, see alignment 2e-15 PF00015: MCPsignal" amino acids 456 to 609 (154 residues), 155.4 bits, see alignment E=3.5e-49

Best Hits

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_02614)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CFF2 at UniProt or InterPro

Protein Sequence (646 amino acids)

>DZA65_RS18385 methyl-accepting chemotaxis protein (Dickeya dianthicola ME23)
MQLAFRRWSLGVKLSVIASLSVAVLFIAFSLSLTRSAGEKLESLTMHDMESQVTGITDMI
AMYDTSLQASVDSYTNLFASFLPSRFTVDNQARLPISATTAPTLKSGDTILNMNTAVTDD
FLSRTGAISTIFVRDGDDFVRITTSLKKEDSSRAIGTKLDRASPAFAPVSGNKSFSGLAV
LFGKQYITQYKPVTDASGSVIAILFVGIDISKEFAQMQKRILDKRIGDSGHFIVLSKAGA
TAGAYLVHPTLSGQKPDWSGDALQQVLKSDGGSLEYDDNSLSGDDRTQVMVYRSVPQWKW
VVVGTISKASLLAEINTIRNLFLGGGIALVALFAVFFVYLTRRWLSRPLDEVVKVAEQFA
AGNLQATLTTESQDEVGRLVDAINDMGHGLTRLVSQVRDAAEEIAAGTDALAEDSGNISE
QISRQASSVEETSATMEQLASTVKQNADNVSAAKGLATESASAAQNGSITVTDSVETMSE
IKRSSQKIADITTTIQSIAFQTNILALNAAVEASRAGEHGKGFAVVAAEVRSLAQRSSTA
VKEIEALITESLHQIETGYRFSEKTRSVMDDLLHRIQQVSTIVNDIDIASREQSQGIEQV
NVAINQIGQAINQNASLVQNSESTAQGLREKGHHLSDVVSVFRIHP