Protein Info for DZA65_RS18295 in Dickeya dianthicola ME23

Annotation: outer membrane protein assembly factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 22 to 96 (75 residues), 71.9 bits, see alignment E=5.6e-24 PF07244: POTRA" amino acids 186 to 240 (55 residues), 36.9 bits, see alignment 7.5e-13 PF01103: Omp85" amino acids 278 to 571 (294 residues), 117.5 bits, see alignment E=1.4e-37

Best Hits

Swiss-Prot: 70% identical to TAMA_CITRI: Translocation and assembly module subunit TamA (tamA) from Citrobacter rodentium (strain ICC168)

KEGG orthology group: K07278, outer membrane protein (inferred from 96% identity to ddd:Dda3937_00166)

Predicted SEED Role

"Uncharacterized protein YtfM precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y3F3 at UniProt or InterPro

Protein Sequence (574 amino acids)

>DZA65_RS18295 outer membrane protein assembly factor (Dickeya dianthicola ME23)
MLGLGSLLLMAAPALAASNVRLQLTGLEGELQKNVRARLSTITPDEVNADGRFRTRVDEA
VRKGLRALGYYDPEIRFEFIPAQGRGRPVLKVTVKPGEPVKIAGASIAIRGGAQSDEDYQ
KLVRQHRPAVGRVLNHGAYDDFKNELNTLSMRKGYFDGRFNKSQLGVMPSTHQAWWDIDY
DSGTRYRFGKVNFRGSQIQTAYLRNLVPFQEGDVYSAEQLGEFNRRLSATGWFNSAVVAP
DFGPGRRNKVLPLDAVLTPRTHNNVETGGGYATDVGPRLKTTWKRPWVNAYGHSLESSLS
LSTPEQQLDLSYKIPLLKSPLEQYYLVQGGFKREDLNDTQSDSTSFNLARYWELSSGWQR
AVNLHWTLDHFTQANVTNTTMLIYPGLSFNRTRQRGGLMPDWGDTQRYSVDVSNTLWGSD
IDFAVFQAQNVWIRTLAEKHRFVARANLGWIETSSFSRVPPSLRFFAGGDRSIRGYKYKS
VSPRDSDGKLTGASKLTAGSLEYQYNVTGKWWGAVFVDSGEAVNDLARTNLKTGAGIGVR
WASPVGPIKLDIARPIGDNDKHGLQFYIGLGPEL