Protein Info for DZA65_RS18290 in Dickeya dianthicola ME23

Annotation: translocation/assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1257 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF04357: TamB" amino acids 921 to 1257 (337 residues), 250.8 bits, see alignment E=1.4e-78

Best Hits

Swiss-Prot: 56% identical to TAMB_CITRI: Translocation and assembly module subunit TamB (tamB) from Citrobacter rodentium (strain ICC168)

KEGG orthology group: K09800, hypothetical protein (inferred from 92% identity to ddd:Dda3937_00167)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y2H2 at UniProt or InterPro

Protein Sequence (1257 amino acids)

>DZA65_RS18290 translocation/assembly module TamB (Dickeya dianthicola ME23)
MSRMKKAGIGLMAGVPALLLAVVLLVTTTPGLHLLLSAAVRWVPGLEIGQVEGGWRDLTL
NAVRYQMPGVTVQTDTLHLALAPDCLWRSQLCLDDLSLQNLTAAINTRDMPPAESESAAQ
TAPVTEISAPVAVALRRVNLSNSRITVDGVDVSLSLLQTGLSWQGRSLTLLPTQVSGLAV
ALPVAPKTPSTPPATTGKPQPLGETLRALFAAPLLPTMPEFTLPLDLTIVDLRGESWQIQ
GSQSVTLSRFQLQAATRQQTLTLQQLTVQSPQGALYAHGNATLAGDWPVALNVNGTVNSD
PLKGERLRLTAEGSLRRQLRLAVNLSGPQRAQLDIQTALAESGLPLNVSLHSPQLRWPLT
GEAQYQFNDVQLNIGGKATDYSLALRGDIRGRELPPGTLTLEGRGSEQQFALTRLRLAAL
QGTADITGQLDWRDAINWNGNLTLKGVNTAQQWPEWPARLEGSLITRGSLAGEVWQLDVP
QLALDGQVRQNKVMVKGALSGNAGGQWSIPGITLALGRNQLTLQGELNDQWRLNGDINAP
SLNGTLPGLGGQVMGTLRLSGKRDAPQLQTEINATALRWQELSLGKLTLNGDVQSDKQLH
GTLTLQLQQLTQGNLRLASLNVRAAGDENQHQLRLTMNGESVGGQLLVGGRLLLNGHFDR
EQQRWQGELSDTRFNTPVGEWRLAPAMPLVYQAATQKVTVGAHCWRNPDAELCVPQPIDA
GASGKASVNLNRFNLAMLKPFIGQQTAVSGTVTGSAQVSWQANGGLPDAHVTLAGNGVTV
RQQVQGGTLPVAFDALTLEAGLQRGQARLAWLMGIQGNGRFRGDVQIADPQRRRNLSGTV
TLNALSLDLLRPILRQNEKAAGIANADLRLGGDLQRPQVFGQLTLDNLDVDGSWMPVDVT
SGRLALLFNGMSSTLQGVFRTTQGQINAAGNADWSVPEAWRARIAVNGDRLRVTVPPMAR
LDVSPDIAFEATPQLLTLNGTVTIPWARIVVHDMPASAVDVSSDEVILDARRRPTSSAAS
AIPIASNLIVRVGDDVWLDAYGLRARLRGDLNVTQDTQGLGLNGQISMPEGRFKAYGQDL
QVRKGQLLFSGPPTQPVLNIEAIRNPDNTADSVTVGVRVTGTAAAPKLEVFSEPTLSQEE
ALSYLLRGQGLNSSGTDSSMMTSALIGLGVAQSGQVVGKIGEAFGVSNLALDTQGVGDKS
QVVVSGYVLPGLQVKYGVGVFDSLATLTLRYRLMPKLYLEAVSGVNQALDVLYQFEF