Protein Info for DZA65_RS17895 in Dickeya dianthicola ME23

Annotation: L-valine transporter subunit YgaH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 70 to 86 (17 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details PF05437: AzlD" amino acids 5 to 105 (101 residues), 51.2 bits, see alignment E=5.7e-18

Best Hits

Swiss-Prot: 59% identical to YGAH_ECOLI: Uncharacterized protein YgaH (ygaH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to ddd:Dda3937_00895)

MetaCyc: 59% identical to L-valine exporter, YgaH component (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-269

Predicted SEED Role

"Branched-chain amino acid transport, AzlD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4D0P5 at UniProt or InterPro

Protein Sequence (113 amino acids)

>DZA65_RS17895 L-valine transporter subunit YgaH (Dickeya dianthicola ME23)
MNTSVLLIGLLVGTVNFLFRYLPLRLGANRASGNLLRGKTALLLDSIGVASICALLVVST
LPDIMQHTERLLPTLAGFALLTLCFYKTRSIVLSTLLGALCYGIVFKWFQTMA