Protein Info for DZA65_RS16600 in Dickeya dianthicola ME23

Annotation: site-specific integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 PF13356: Arm-DNA-bind_3" amino acids 2 to 87 (86 residues), 71.6 bits, see alignment E=7.5e-24 PF14659: Phage_int_SAM_3" amino acids 110 to 148 (39 residues), 24.1 bits, see alignment 5.2e-09 PF00589: Phage_integrase" amino acids 204 to 375 (172 residues), 73.4 bits, see alignment E=2.9e-24

Best Hits

KEGG orthology group: None (inferred from 86% identity to ecg:E2348C_2781)

Predicted SEED Role

"Phage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y087 at UniProt or InterPro

Protein Sequence (417 amino acids)

>DZA65_RS16600 site-specific integrase (Dickeya dianthicola ME23)
MLTDTKLKNLKPEEKLYKVSDRDGLYVAVLTSGSVSFRYDYRINGRRETLVIGQYGRDGI
SLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAETFAVHTDHYMKHIVLADSTRTMK
ESVIERDIMPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGH
GLFNPASDIKPSSIAMFKPRDRCLQPEEVGIFFRTLDTVAAMATMKLALKLVLLTMVRKN
EFINATWKEVDFKKWEWVIPSDRMKGSRAHVIYLPRQAQDLMVGLQMCAGGSEYLLPGRY
SVIRPLSNSALNRLITTTVEAAQAAGYNLEHFAVHDMRRTASTLLHEAGYPSDWIEKALA
HEQRGVRSVYNKAEYARQRAYMLQQWADMIDSWIAGEHYDLIQFSPARLDAWMSKQA