Protein Info for DZA65_RS15870 in Dickeya dianthicola ME23

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 14 to 42 (29 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 98 to 115 (18 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 16 to 122 (107 residues), 49.4 bits, see alignment E=2.8e-17 PF00528: BPD_transp_1" amino acids 37 to 227 (191 residues), 63.4 bits, see alignment E=1.2e-21

Best Hits

Swiss-Prot: 51% identical to OCCQ_RHIML: Octopine transport system permease protein OccQ (occQ) from Rhizobium meliloti

KEGG orthology group: K10020, octopine/nopaline transport system permease protein (inferred from 94% identity to dze:Dd1591_1257)

Predicted SEED Role

"Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)" in subsystem Arginine and Ornithine Degradation (TC 3.A.1.3.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C855 at UniProt or InterPro

Protein Sequence (240 amino acids)

>DZA65_RS15870 ABC transporter permease subunit (Dickeya dianthicola ME23)
MLALLDFSDQGWGGLLAMAALTTLCLTMAALLIGALVGAAVAAAKLSTRRLWRVAGESYS
VVFRGIPELLIIYLFYFGGSGVLTQVGRWFGADGFIELPPFLIGALAIGLISASYQGEVY
RAARLAVNSGELEAARAMGMPRWRIGWRILLPQVMRFALPGLSNVWQMSLKDSALVSVTG
IIELMRASQMAAGSTRDYFLFYLTGAALYLILTVFSNTAFARLERTLSQPYHRKTPQEPS