Protein Info for DZA65_RS15455 in Dickeya dianthicola ME23

Annotation: TSUP family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 6 to 11 (6 residues), see Phobius details transmembrane" amino acids 12 to 42 (31 residues), see Phobius details amino acids 51 to 52 (2 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 192 to 217 (26 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details PF01925: TauE" amino acids 14 to 249 (236 residues), 174 bits, see alignment E=2.1e-55

Best Hits

Swiss-Prot: 66% identical to YFCA_ECO57: Probable membrane transporter protein YfcA (yfcA) from Escherichia coli O157:H7

KEGG orthology group: K07090, (no description) (inferred from 96% identity to ddd:Dda3937_00495)

Predicted SEED Role

"Putative membrane protein YfcA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4CR61 at UniProt or InterPro

Protein Sequence (266 amino acids)

>DZA65_RS15455 TSUP family transporter (Dickeya dianthicola ME23)
MEWFVVGPDVLALLFLASVIAGFVDSIAGGGGLLSIPVLLAAGLSPAQVLATNKLQAVGG
SFSASLYFIRRKAVDMKVLTLAVPLTFLGAMFGAWLIQQIHADFLRKLLPVLVIGIGLYF
LLMPKVGDEDRHARLSLLPFSLLGGTCVGFYDGFFGPGAGSFYALAYVTLLGFNLAKATA
HAKVLNFTSNFGGLLFFMLGGQVVWGVGVVMLVGQIIGARLGARMVLTRGQKLIRPMLVV
MSALMSIKLIHDNHGSEIARWLGQLF