Protein Info for DZA65_RS15265 in Dickeya dianthicola ME23

Annotation: YfbU family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF03887: YfbU" amino acids 1 to 164 (164 residues), 228.8 bits, see alignment E=2e-72

Best Hits

Swiss-Prot: 90% identical to Y3037_PECAS: UPF0304 protein ECA3037 (ECA3037) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K09161, hypothetical protein (inferred from 96% identity to dze:Dd1591_1387)

Predicted SEED Role

"FIG00361523: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385Y1U5 at UniProt or InterPro

Protein Sequence (164 amino acids)

>DZA65_RS15265 YfbU family protein (Dickeya dianthicola ME23)
MEMTNAQRLILSNQYKMMSMLDPDNAERYRRLQTIIERGYGLQMRELDRDFGDLDEDVCR
TLINVMEMHHALQVSWANLKEKPDMDERRLAFLGFDAATEARYLGYVRFMVHVEGRYPHF
DSGTHGFNSQTKMWDKYIRMLAVWQSCPRQYHLSAVEIAQIVNA