Protein Info for DZA65_RS15095 in Dickeya dianthicola ME23

Annotation: head protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF10124: Mu-like_gpT" amino acids 9 to 151 (143 residues), 184.7 bits, see alignment E=1.2e-58 amino acids 164 to 230 (67 residues), 44.9 bits, see alignment E=4.9e-16 amino acids 233 to 298 (66 residues), 84.3 bits, see alignment E=5e-28

Best Hits

KEGG orthology group: None (inferred from 77% identity to ecg:E2348C_2664)

Predicted SEED Role

"Phage major capsid protein" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A3A4C3R4 at UniProt or InterPro

Protein Sequence (302 amino acids)

>DZA65_RS15095 head protein (Dickeya dianthicola ME23)
MLVNAGNVRQIFINLKATFQKAFKQSSTDWQKVAMLVPSTGKENDYSWLSQFPKMKEWIG
DKDIESLEAFNYTVRNKDWEATVEVDRNHIEDDQLLGYGMQAQAAGQSAAELPADIVFAL
LSDGFTNLCYDGQPFFDTDHPVAGRSVSNKGTKKLSAASLAAAQASYGAARTALRVMKDD
RGASLRIKPGLLVVPPALEDVANYLMTADRFPDNTPNTYKGTAEVLVVPELKTDTEWFLL
DNAQLMKPLIYQERKKPEFVEQTDYSNDNVFSRKKFRFGAEARANGGYGFWQMAYGSTGE
DA