Protein Info for DZA65_RS14850 in Dickeya dianthicola ME23

Annotation: carbamoyltransferase HypF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 770 PF00708: Acylphosphatase" amino acids 10 to 90 (81 residues), 48 bits, see alignment E=3e-16 TIGR00143: carbamoyltransferase HypF" amino acids 11 to 762 (752 residues), 851.8 bits, see alignment E=2.1e-260 PF07503: zf-HYPF" amino acids 110 to 143 (34 residues), 55.9 bits, see alignment (E = 7.4e-19) amino acids 161 to 192 (32 residues), 55.1 bits, see alignment (E = 1.4e-18) PF01300: Sua5_yciO_yrdC" amino acids 212 to 388 (177 residues), 143.6 bits, see alignment E=1.2e-45 PF17788: HypF_C" amino acids 404 to 504 (101 residues), 110.7 bits, see alignment E=1.2e-35 PF22521: HypF_C_2" amino acids 516 to 758 (243 residues), 223.5 bits, see alignment E=8.8e-70

Best Hits

KEGG orthology group: K04656, hydrogenase maturation protein HypF (inferred from 90% identity to ddd:Dda3937_01825)

Predicted SEED Role

"[NiFe] hydrogenase metallocenter assembly protein HypF" in subsystem NiFe hydrogenase maturation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A385XZI4 at UniProt or InterPro

Protein Sequence (770 amino acids)

>DZA65_RS14850 carbamoyltransferase HypF (Dickeya dianthicola ME23)
MMSPHHNGIEIRVKGKVQGVGFRPYVWQIAHRLGAKGSVLNDGAGVLVRLWPVSAEADFI
AALYAECPPLAQIDQVTCQPYCWETPPDDFIIEHSGAGQMDTHIVPDAATCDACRQELFD
PCDRRYRYSFINCTHCGPRFTIIRQMPYDRPNTAMAAFPFCPTCQQEYRHPADRRFHAQP
NACHTCGPQVWLSNASGTVARDDDAIIQAAAALCDGRIVAVKGLGGFHLACDATDAQAVA
RLRARKHRPAKPLAVMLPEADWLARCSTVTEPASALRMMQSPAAPIVLLPLRHDGALAAE
IAPGLDDVGLMLPANPLQHLLLAAVARPLVMTSGNAGGKPPALDNMQALAELAAIADLWL
LHDRDIVQRADDSVVRMQGEQAEMLRRARGYVPDALPLPPGFSQQPSLLAMGADLKNTFC
LLRDGAAIVSQHLGDLADDEVEQQYRQAQALFADIYRFTPQAIAVDAHPGYVSRRLGQQQ
AEQLGIPCIEVLHHHAHIVACLAEHQWPRDAGPVIGLALDGIGYGGDNRWWGGECLRVDY
GQCQHLGGLPAVALPGGDLAARQPWRNLLAQCLAFVPDWETLAPNWETLAPAGVIPTDAV
PLLTRAIGRGLNAPLASSAGRLFDAVAAACGFAGEQSWEGEAACWLEALARQHQDDRPPV
TLPLAGTQLDLATFWRQFLAYRAAPADRAFAFHLALADGLAALVRQAAREHGLNTVACSG
GVMHNRLLVTLLRERLADFTLLSPSRLPAGDGGLALGQALIAASCLSTRG